J3_8S8F_006
3D structure
- PDB id
- 8S8F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-3.2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.95 Å
Loop
- Sequence
- CUA*UUACG*CAAAG
- Length
- 13 nucleotides
- Bulged bases
- 8S8F|1|2|C|1081, 8S8F|1|2|A|1092
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8S8F_006 not in the Motif Atlas
- Geometric match to J3_4V88_034
- Geometric discrepancy: 0.3703
- The information below is about J3_4V88_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23622.1
- Basepair signature
- cWW-tWW-tWW-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8S8F|1|2|C|1036
8S8F|1|2|U|1037
8S8F|1|2|A|1038
*
8S8F|1|2|U|1078
8S8F|1|2|U|1079
8S8F|1|2|A|1080
8S8F|1|2|C|1081
8S8F|1|2|G|1082
*
8S8F|1|2|C|1089
8S8F|1|2|A|1090
8S8F|1|2|A|1091
8S8F|1|2|A|1092
8S8F|1|2|G|1093
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain A
- Small ribosomal subunit protein uS2
- Chain N
- KLLA0F18040p
- Chain V
- 40S ribosomal protein S21
- Chain W
- Small ribosomal subunit protein uS8
- Chain a
- 40S ribosomal protein S26
- Chain b
- 40S ribosomal protein S27
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