J3_8S8H_007
3D structure
- PDB id
- 8S8H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2.2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CCAG*CUAGUAA*UGAUUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8S8H_007 not in the Motif Atlas
- Homologous match to J3_8C3A_038
- Geometric discrepancy: 0.085
- The information below is about J3_8C3A_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.2
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8S8H|1|2|C|1160
8S8H|1|2|C|1161
8S8H|1|2|A|1162
8S8H|1|2|G|1163
*
8S8H|1|2|C|1579
8S8H|1|2|U|1580
8S8H|1|2|A|1581
8S8H|1|2|G|1582
8S8H|1|2|U|1583
8S8H|1|2|A|1584
8S8H|1|2|A|1585
*
8S8H|1|2|U|1607
8S8H|1|2|G|1608
8S8H|1|2|A|1609
8S8H|1|2|U|1610
8S8H|1|2|U|1611
8S8H|1|2|A|1612
8S8H|1|2|C|1613
8S8H|1|2|G|1614
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain F
- KLLA0D10659p
- Chain Q
- Small ribosomal subunit protein uS9
- Chain c
- Small ribosomal subunit protein eS28
- Chain j
- Eukaryotic translation initiation factor 2 subunit alpha
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