J3_8SCB_005

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8SCB_005 not in the Motif Atlas

Homologous match to J3_8C3A_005

Geometric discrepancy: 0.2121

The information below is about J3_8C3A_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

8SCB|1|5|G|1969
8SCB|1|5|A|1970
8SCB|1|5|C|1971
*
8SCB|1|5|G|1995
8SCB|1|5|C|1996
8SCB|1|5|U|1997
8SCB|1|5|A|1998
8SCB|1|5|A|1999
8SCB|1|5|G|2000
8SCB|1|5|G|2001
*
8SCB|1|5|C|2016
8SCB|1|5|A|2017
8SCB|1|5|C|2018

Current chains

Chain 5

28S_rRNA

Nearby chains

Chain s

60S acidic ribosomal protein P0

Chain t

60S ribosomal protein L12