J3_8SCB_022
3D structure
- PDB id
- 8SCB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Terminating ribosome with SRI-41315
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8SCB_022 not in the Motif Atlas
- Homologous match to J3_4V88_039
- Geometric discrepancy: 0.3041
- The information below is about J3_4V88_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47248.1
- Basepair signature
- cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
8SCB|1|9|U|1340
8SCB|1|9|C|1341
8SCB|1|9|U|1342
8SCB|1|9|U|1343
8SCB|1|9|A|1344
8SCB|1|9|G|1345
*
8SCB|1|9|C|1384
8SCB|1|9|G|1385
8SCB|1|9|A|1386
8SCB|1|9|G|1387
8SCB|1|9|A|1388
8SCB|1|9|C|1389
*
8SCB|1|9|G|1481
8SCB|1|9|C|1482
8SCB|1|9|A|1483
8SCB|1|9|A|1484
8SCB|1|9|U|1485
8SCB|1|9|A|1486
Current chains
- Chain 9
- 18S_rRNA
Nearby chains
- Chain CC
- uS5
- Chain DD
- Ribosomal protein S3
- Chain QQ
- uS9
- Chain RR
- eS17
- Chain UU
- uS10
- Chain dd
- uS14
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