J3_8SCB_024

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CACUG*CGUGAUGG*CGAG

Length

17 nucleotides

Bulged bases

8SCB|1|9|U|1535, 8SCB|1|9|G|1603

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8SCB_024 not in the Motif Atlas

Homologous match to J3_4V88_041

Geometric discrepancy: 0.1616

The information below is about J3_4V88_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.3

Basepair signature

cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-F-F-cWW

Number of instances in this motif group

5

Unit IDs

8SCB|1|9|C|1532
8SCB|1|9|A|1533
8SCB|1|9|C|1534
8SCB|1|9|U|1535
8SCB|1|9|G|1536
*
8SCB|1|9|C|1597
8SCB|1|9|G|1598
8SCB|1|9|U|1599
8SCB|1|9|G|1600
8SCB|1|9|A|1601
8SCB|1|9|U|1602
8SCB|1|9|G|1603
8SCB|1|9|G|1604
*
8SCB|1|9|C|1635
8SCB|1|9|G|1636
8SCB|1|9|A|1637
8SCB|1|9|G|1638

Current chains

Chain 9

18S_rRNA

Nearby chains

Chain FF

uS7

Chain SS

uS13

Chain TT

eS19

Chain ZZ

eS25