J3_8SCB_035
3D structure
- PDB id
- 8SCB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Terminating ribosome with SRI-41315
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- (OMG)UC*GCCUCACGAUCC*(OMG)GUGUC
- Length
- 21 nucleotides
- Bulged bases
- 8SCB|1|5|C|4337, 8SCB|1|5|U|4374
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8SCB_035 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.0685
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8SCB|1|5|OMG|4228
8SCB|1|5|U|4229
8SCB|1|5|C|4230
*
8SCB|1|5|G|4331
8SCB|1|5|C|4332
8SCB|1|5|C|4333
8SCB|1|5|U|4334
8SCB|1|5|C|4335
8SCB|1|5|A|4336
8SCB|1|5|C|4337
8SCB|1|5|G|4338
8SCB|1|5|A|4339
8SCB|1|5|U|4340
8SCB|1|5|C|4341
8SCB|1|5|C|4342
*
8SCB|1|5|OMG|4370
8SCB|1|5|G|4371
8SCB|1|5|U|4372
8SCB|1|5|G|4373
8SCB|1|5|U|4374
8SCB|1|5|C|4375
Current chains
- Chain 5
- 28S_rRNA
Nearby chains
- Chain 3
- Transfer RNA; tRNA
- Chain Q
- Ribosomal protein L18
- Chain T
- eL21
- Chain a
- 60S ribosomal protein L27a
- Chain o
- eL42
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