J3_8SCB_038

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

AG*CGC(A2M)AAU*(A2M)GU

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8SCB_038 not in the Motif Atlas

Geometric match to J3_4V88_078

Geometric discrepancy: 0.0642

The information below is about J3_4V88_078

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.1

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

8SCB|1|9|A|40
8SCB|1|9|G|41
*
8SCB|1|9|C|481
8SCB|1|9|G|482
8SCB|1|9|C|483
8SCB|1|9|A2M|484
8SCB|1|9|A|485
8SCB|1|9|A|486
8SCB|1|9|U|487
*
8SCB|1|9|A2M|512
8SCB|1|9|G|513
8SCB|1|9|U|514

Current chains

Chain 9

18S_rRNA

Nearby chains

Chain JJ

uS4

Chain XX

uS12

Chain jj

ATP binding cassette subfamily E member 1