J3_8SUP_006

3D structure

PDB id

8SUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 48S translation initiation complex assembled on the encephalomyocarditis virus IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUUC*GGACCAGAG*CAUUU

Length

18 nucleotides

Bulged bases

8SUP|1|2|G|991

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8SUP|1|2|A|938
8SUP|1|2|U|939
8SUP|1|2|U|940
8SUP|1|2|C|941
*
8SUP|1|2|G|985
8SUP|1|2|G|986
8SUP|1|2|A|987
8SUP|1|2|C|988
8SUP|1|2|C|989
8SUP|1|2|A|990
8SUP|1|2|G|991
8SUP|1|2|A|992
8SUP|1|2|G|993
*
8SUP|1|2|C|1000
8SUP|1|2|A|1001
8SUP|1|2|U|1002
8SUP|1|2|U|1003
8SUP|1|2|U|1004

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

eS1

Chain O

uS15

Chain P

Small ribosomal subunit protein uS11

Chain b

eS26