J3_8SUP_012

3D structure

PDB id

8SUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 48S translation initiation complex assembled on the encephalomyocarditis virus IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCUUAG*CGAGAC*GCAAUA

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8SUP|1|2|U|1340
8SUP|1|2|C|1341
8SUP|1|2|U|1342
8SUP|1|2|U|1343
8SUP|1|2|A|1344
8SUP|1|2|G|1345
*
8SUP|1|2|C|1384
8SUP|1|2|G|1385
8SUP|1|2|A|1386
8SUP|1|2|G|1387
8SUP|1|2|A|1388
8SUP|1|2|C|1389
*
8SUP|1|2|G|1481
8SUP|1|2|C|1482
8SUP|1|2|A|1483
8SUP|1|2|A|1484
8SUP|1|2|U|1485
8SUP|1|2|A|1486

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

40S ribosomal protein S2

Chain E

uS3

Chain R

uS9

Chain S

eS17

Chain V

uS10

Chain e

uS14