J3_9H3G_039
3D structure
- PDB id
- 9H3G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs and mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.82 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17077.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9H3G|1|h1|U|1284
9H3G|1|h1|C|1285
9H3G|1|h1|U|1286
9H3G|1|h1|U|1287
9H3G|1|h1|A|1288
9H3G|1|h1|G|1289
*
9H3G|1|h1|C|1328
9H3G|1|h1|G|1329
9H3G|1|h1|A|1330
9H3G|1|h1|G|1331
9H3G|1|h1|A|1332
9H3G|1|h1|C|1333
*
9H3G|1|h1|G|1422
9H3G|1|h1|C|1423
9H3G|1|h1|A|1424
9H3G|1|h1|A|1425
9H3G|1|h1|U|1426
9H3G|1|h1|A|1427
Current chains
- Chain h1
- Ribosomal RNA 18S
Nearby chains
- Chain AA
- Small ribosomal subunit protein uS3z
- Chain AC
- Small ribosomal subunit protein uS5y/uS5u/uS5v
- Chain AF
- Small ribosomal subunit protein uS9z
- Chain BB
- Small ribosomal subunit protein eS17w
- Chain Ba
- Small ribosomal subunit protein uS10y
- Chain Ca
- Small ribosomal subunit protein uS14z/uS14y/uS14x
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