J3_8SUP_015

3D structure

PDB id

8SUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 48S translation initiation complex assembled on the encephalomyocarditis virus IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CACUG*CGUGAUGG*CGAG

Length

17 nucleotides

Bulged bases

8SUP|1|2|U|1535, 8SUP|1|2|G|1603

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8SUP|1|2|C|1532
8SUP|1|2|A|1533
8SUP|1|2|C|1534
8SUP|1|2|U|1535
8SUP|1|2|G|1536
*
8SUP|1|2|C|1597
8SUP|1|2|G|1598
8SUP|1|2|U|1599
8SUP|1|2|G|1600
8SUP|1|2|A|1601
8SUP|1|2|U|1602
8SUP|1|2|G|1603
8SUP|1|2|G|1604
*
8SUP|1|2|C|1635
8SUP|1|2|G|1636
8SUP|1|2|A|1637
8SUP|1|2|G|1638

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

uS7

Chain T

uS13

Chain U

eS19

Chain a

eS25