J3_8SYL_001

3D structure

PDB id

8SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

8SYL|1|A|U|686, 8SYL|1|A|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8SYL_001 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.3286

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8SYL|1|A|U|683
8SYL|1|A|G|684
8SYL|1|A|A|685
8SYL|1|A|U|686
8SYL|1|A|C|687
8SYL|1|A|U|688
8SYL|1|A|A|689
*
8SYL|1|A|U|773
8SYL|1|A|G|774
8SYL|1|A|G|775
*
8SYL|1|A|C|791
8SYL|1|A|A|792
8SYL|1|A|A|793
8SYL|1|A|A|794

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain C

50S ribosomal protein L2