J3_8SYL_008
3D structure
- PDB id
- 8SYL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAAC*GUUGAU*AAUGAAC
- Length
- 17 nucleotides
- Bulged bases
- 8SYL|1|A|U|2833, 8SYL|1|A|A|2835
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8SYL_008 not in the Motif Atlas
- Homologous match to J3_5J7L_048
- Geometric discrepancy: 0.123
- The information below is about J3_5J7L_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64069.1
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
8SYL|1|A|G|2812
8SYL|1|A|A|2813
8SYL|1|A|A|2814
8SYL|1|A|C|2815
*
8SYL|1|A|G|2831
8SYL|1|A|U|2832
8SYL|1|A|U|2833
8SYL|1|A|G|2834
8SYL|1|A|A|2835
8SYL|1|A|U|2836
*
8SYL|1|A|A|2882
8SYL|1|A|A|2883
8SYL|1|A|U|2884
8SYL|1|A|G|2885
8SYL|1|A|A|2886
8SYL|1|A|A|2887
8SYL|1|A|C|2888
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L32
- Chain D
- 50S ribosomal protein L3
- Chain P
- 50S ribosomal protein L17
- Chain U
- 50S ribosomal protein L22
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