3D structure

PDB id
8SYL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCUA
Length
25 nucleotides
Bulged bases
8SYL|1|a|A|975, 8SYL|1|a|G|976
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8SYL_013 not in the Motif Atlas
Homologous match to J3_5J7L_006
Geometric discrepancy: 0.07
The information below is about J3_5J7L_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

8SYL|1|a|U|955
8SYL|1|a|U|956
8SYL|1|a|U|957
8SYL|1|a|A|958
8SYL|1|a|A|959
8SYL|1|a|U|960
8SYL|1|a|U|961
8SYL|1|a|C|962
*
8SYL|1|a|G|973
8SYL|1|a|A|974
8SYL|1|a|A|975
8SYL|1|a|G|976
8SYL|1|a|A|977
8SYL|1|a|A|978
8SYL|1|a|C|979
8SYL|1|a|C|980
8SYL|1|a|U|981
8SYL|1|a|U|982
8SYL|1|a|A|983
8SYL|1|a|C|984
*
8SYL|1|a|G|1221
8SYL|1|a|G|1222
8SYL|1|a|C|1223
8SYL|1|a|U|1224
8SYL|1|a|A|1225

Current chains

Chain a
16S Ribosomal RNA

Nearby chains

Chain j
30S ribosomal protein S10
Chain m
30S ribosomal protein S13
Chain n
30S ribosomal protein S14
Chain s
30S ribosomal protein S19
Chain w
Transfer RNA; tRNA

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2432 s