J3_8SYL_020
3D structure
- PDB id
- 8SYL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 8SYL|1|A|A|504, 8SYL|1|A|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8SYL_020 not in the Motif Atlas
- Homologous match to J3_9DFE_002
- Geometric discrepancy: 0.1003
- The information below is about J3_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
8SYL|1|A|G|30
8SYL|1|A|C|31
*
8SYL|1|A|G|474
8SYL|1|A|C|475
8SYL|1|A|G|476
8SYL|1|A|A|477
8SYL|1|A|A|478
8SYL|1|A|A|479
8SYL|1|A|A|480
8SYL|1|A|G|481
8SYL|1|A|A|482
8SYL|1|A|A|483
8SYL|1|A|C|484
*
8SYL|1|A|G|496
8SYL|1|A|A|497
8SYL|1|A|G|498
8SYL|1|A|U|499
8SYL|1|A|G|500
8SYL|1|A|A|501
8SYL|1|A|A|502
8SYL|1|A|A|503
8SYL|1|A|A|504
8SYL|1|A|A|505
8SYL|1|A|G|506
8SYL|1|A|A|507
8SYL|1|A|A|508
8SYL|1|A|C|509
8SYL|1|A|C|510
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain S
- 50S ribosomal protein L20
- Chain U
- 50S ribosomal protein L22
- Chain W
- 50S ribosomal protein L24
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