3D structure

PDB id
8T2X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PRE
Experimental method
ELECTRON MICROSCOPY
Resolution
2.46 Å

Loop

Sequence
AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
Length
28 nucleotides
Bulged bases
8T2X|1|A1|A|398, 8T2X|1|A1|A|402
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8T2X_006 not in the Motif Atlas
Homologous match to J3_8C3A_049
Geometric discrepancy: 0.0912
The information below is about J3_8C3A_049
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_91149.1
Basepair signature
cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
Number of instances in this motif group
6

Unit IDs

8T2X|1|A1|A|369
8T2X|1|A1|U|370
8T2X|1|A1|G|371
8T2X|1|A1|A|372
8T2X|1|A1|A|373
8T2X|1|A1|A|374
8T2X|1|A1|A|375
8T2X|1|A1|G|376
8T2X|1|A1|A|377
8T2X|1|A1|A|378
8T2X|1|A1|C|379
*
8T2X|1|A1|G|390
8T2X|1|A1|A|391
8T2X|1|A1|G|392
8T2X|1|A1|U|393
8T2X|1|A1|G|394
8T2X|1|A1|A|395
8T2X|1|A1|A|396
8T2X|1|A1|A|397
8T2X|1|A1|A|398
8T2X|1|A1|A|399
8T2X|1|A1|G|400
8T2X|1|A1|U|401
8T2X|1|A1|A|402
8T2X|1|A1|C|403
8T2X|1|A1|G|404
*
8T2X|1|A4|C|19
8T2X|1|A4|U|20

Current chains

Chain A1
25S rRNA
Chain A4
5.8 S rRNA

Nearby chains

Chain AC
RPL4A isoform 1
Chain AP
60S ribosomal protein L17-A
Chain AY
60S ribosomal protein L26-A
Chain Al
60S ribosomal protein L39

Coloring options:


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