J3_8T2X_027

3D structure

PDB id

8T2X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PRE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

AG*CGCAAAU*AG(PSU)

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8T2X_027 not in the Motif Atlas

Geometric match to J3_4V88_078

Geometric discrepancy: 0.0804

The information below is about J3_4V88_078

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.1

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

8T2X|1|B5|A|41
8T2X|1|B5|G|42
*
8T2X|1|B5|C|433
8T2X|1|B5|G|434
8T2X|1|B5|C|435
8T2X|1|B5|A|436
8T2X|1|B5|A|437
8T2X|1|B5|A|438
8T2X|1|B5|U|439
*
8T2X|1|B5|A|464
8T2X|1|B5|G|465
8T2X|1|B5|PSU|466

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BJ

40S ribosomal protein S9-A

Chain BX

40S ribosomal protein S23-A