J3_8T2Y_012

3D structure

PDB id

8T2Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

8T2Y|1|A1|A|1482

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8T2Y_012 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.1559

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

8T2Y|1|A1|U|1479
8T2Y|1|A1|G|1480
8T2Y|1|A1|A|1481
8T2Y|1|A1|A|1482
8T2Y|1|A1|G|1483
8T2Y|1|A1|U|1484
8T2Y|1|A1|G|1485
*
8T2Y|1|A1|C|1857
8T2Y|1|A1|A|1858
8T2Y|1|A1|A|1859
*
8T2Y|1|A1|U|1871
8T2Y|1|A1|C|1872
8T2Y|1|A1|U|1873
8T2Y|1|A1|A|1874

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AR

60S ribosomal protein L19-A

Chain Ag

60S ribosomal protein L34-A