J3_8T2Y_015

3D structure

PDB id

8T2Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AGAUGG*CGUUUCAAAGGC*GCCACCAU

Length

26 nucleotides

Bulged bases

8T2Y|1|A1|C|1556, 8T2Y|1|A1|A|1558, 8T2Y|1|A1|C|1581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8T2Y_015 not in the Motif Atlas

Homologous match to J3_8P9A_056

Geometric discrepancy: 0.5716

The information below is about J3_8P9A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_38098.1

Basepair signature

cWW-tSH-tWH-tWW-F-tHS-F-cWW-F-F-F-F-F-F-cWW-F-F-F

Number of instances in this motif group

1

Unit IDs

8T2Y|1|A1|A|1537
8T2Y|1|A1|G|1538
8T2Y|1|A1|A|1539
8T2Y|1|A1|U|1540
8T2Y|1|A1|G|1541
8T2Y|1|A1|G|1542
*
8T2Y|1|A1|C|1551
8T2Y|1|A1|G|1552
8T2Y|1|A1|U|1553
8T2Y|1|A1|U|1554
8T2Y|1|A1|U|1555
8T2Y|1|A1|C|1556
8T2Y|1|A1|A|1557
8T2Y|1|A1|A|1558
8T2Y|1|A1|A|1559
8T2Y|1|A1|G|1560
8T2Y|1|A1|G|1561
8T2Y|1|A1|C|1562
*
8T2Y|1|A1|G|1577
8T2Y|1|A1|C|1578
8T2Y|1|A1|C|1579
8T2Y|1|A1|A|1580
8T2Y|1|A1|C|1581
8T2Y|1|A1|C|1582
8T2Y|1|A1|A|1583
8T2Y|1|A1|U|1584

Current chains

Chain A1

25S rRNA

Nearby chains

Chain A4

5.8S ribosomal RNA; 5.8S rRNA

Chain AA

60S ribosomal protein L2-A

Chain AG

60S ribosomal protein L8-A

Chain AN

60S ribosomal protein L15-A

Chain AX

60S ribosomal protein L25

Chain Aj

60S ribosomal protein L37-A