J3_8T2Y_025
3D structure
- PDB id
- 8T2Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CCAUAU*AG*UG
- Length
- 10 nucleotides
- Bulged bases
- 8T2Y|1|A3|U|12
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8T2Y_025 not in the Motif Atlas
- Homologous match to J3_8P9A_066
- Geometric discrepancy: 0.0737
- The information below is about J3_8P9A_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_12003.2
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
8T2Y|1|A3|C|9
8T2Y|1|A3|C|10
8T2Y|1|A3|A|11
8T2Y|1|A3|U|12
8T2Y|1|A3|A|13
8T2Y|1|A3|U|14
*
8T2Y|1|A3|A|66
8T2Y|1|A3|G|67
*
8T2Y|1|A3|U|111
8T2Y|1|A3|G|112
Current chains
- Chain A3
- 5s rRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain AD
- RPL5 isoform 1
- Chain AI
- RPL10 isoform 1
- Chain AT
- 60S ribosomal protein L21-A
Coloring options: