J3_8T2Z_009
3D structure
- PDB id
- 8T2Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UAG*CGUAG*UCGA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8T2Z_009 not in the Motif Atlas
- Homologous match to J3_8C3A_004
- Geometric discrepancy: 0.094
- The information below is about J3_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44724.5
- Basepair signature
- cWW-tSH-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
8T2Z|1|A1|U|829
8T2Z|1|A1|A|830
8T2Z|1|A1|G|831
*
8T2Z|1|A1|C|863
8T2Z|1|A1|G|864
8T2Z|1|A1|U|865
8T2Z|1|A1|A|866
8T2Z|1|A1|G|867
*
8T2Z|1|A1|U|892
8T2Z|1|A1|C|893
8T2Z|1|A1|G|894
8T2Z|1|A1|A|895
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AA
- 60S ribosomal protein L2-A
- Chain AR
- 60S ribosomal protein L19-A
- Chain Ag
- 60S ribosomal protein L34-A
- Chain Ap
- 60S ribosomal protein L43-A
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