J3_8T2Z_028

3D structure

PDB id

8T2Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AG(PSU)

Length

20 nucleotides

Bulged bases

8T2Z|1|B5|A|47

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8T2Z_028 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.066

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8T2Z|1|B5|A|41
8T2Z|1|B5|G|42
8T2Z|1|B5|A|43
8T2Z|1|B5|U|44
8T2Z|1|B5|U|45
8T2Z|1|B5|A|46
8T2Z|1|B5|A|47
8T2Z|1|B5|G|48
*
8T2Z|1|B5|C|431
8T2Z|1|B5|G|432
8T2Z|1|B5|C|433
8T2Z|1|B5|G|434
8T2Z|1|B5|C|435
8T2Z|1|B5|A|436
8T2Z|1|B5|A|437
8T2Z|1|B5|A|438
8T2Z|1|B5|U|439
*
8T2Z|1|B5|A|464
8T2Z|1|B5|G|465
8T2Z|1|B5|PSU|466

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BJ

40S ribosomal protein S9-A

Chain BX

40S ribosomal protein S23-A