J3_8T30_010
3D structure
- PDB id
- 8T30 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with cycloheximide, unmodified U2921, mid rotated
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.88 Å
Loop
- Sequence
- (PSU)U*AGAAG*CAUUUGA
- Length
- 14 nucleotides
- Bulged bases
- 8T30|1|A1|A|1065, 8T30|1|A1|U|1095
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8T30_010 not in the Motif Atlas
- Homologous match to J3_8C3A_051
- Geometric discrepancy: 0.3174
- The information below is about J3_8C3A_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11066.3
- Basepair signature
- cWW-cSS-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8T30|1|A1|PSU|986
8T30|1|A1|U|987
*
8T30|1|A1|A|1062
8T30|1|A1|G|1063
8T30|1|A1|A|1064
8T30|1|A1|A|1065
8T30|1|A1|G|1066
*
8T30|1|A1|C|1092
8T30|1|A1|A|1093
8T30|1|A1|U|1094
8T30|1|A1|U|1095
8T30|1|A1|U|1096
8T30|1|A1|G|1097
8T30|1|A1|A|1098
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AF
- 60S ribosomal protein L7-A
- Chain AT
- 60S ribosomal protein L21-A
- Chain Ab
- RPL29 isoform 1
Coloring options: