J3_8T30_013
3D structure
- PDB id
- 8T30 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with cycloheximide, unmodified U2921, mid rotated
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.88 Å
Loop
- Sequence
- GAAA*UGAUAAC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 8T30|1|A1|U|1840, 8T30|1|A1|A|1841
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8T30_013 not in the Motif Atlas
- Homologous match to J3_8P9A_054
- Geometric discrepancy: 0.0659
- The information below is about J3_8P9A_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76012.1
- Basepair signature
- cWW-F-tHW-tHS-tWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8T30|1|A1|G|1488
8T30|1|A1|A|1489
8T30|1|A1|A|1490
8T30|1|A1|A|1491
*
8T30|1|A1|U|1837
8T30|1|A1|G|1838
8T30|1|A1|A|1839
8T30|1|A1|U|1840
8T30|1|A1|A|1841
8T30|1|A1|A|1842
8T30|1|A1|C|1843
*
8T30|1|A1|G|1852
8T30|1|A1|U|1853
8T30|1|A1|C|1854
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain Ag
- 60S ribosomal protein L34-A
- Chain Aj
- 60S ribosomal protein L37-A
- Chain Al
- 60S ribosomal protein L39
Coloring options: