J3_8T30_034

3D structure

PDB id

8T30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, unmodified U2921, mid rotated

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8T30_034 not in the Motif Atlas

Homologous match to J3_8C3A_038

Geometric discrepancy: 0.2388

The information below is about J3_8C3A_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.2

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8T30|1|B5|C|1161
8T30|1|B5|C|1162
8T30|1|B5|A|1163
8T30|1|B5|G|1164
*
8T30|1|B5|C|1581
8T30|1|B5|U|1582
8T30|1|B5|A|1583
8T30|1|B5|G|1584
8T30|1|B5|U|1585
8T30|1|B5|A|1586
8T30|1|B5|A|1587
*
8T30|1|B5|U|1609
8T30|1|B5|G|1610
8T30|1|B5|A|1611
8T30|1|B5|U|1612
8T30|1|B5|U|1613
8T30|1|B5|A|1614
8T30|1|B5|C|1615
8T30|1|B5|G|1616

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BF

Rps5p

Chain BQ

40S ribosomal protein S16-A

Chain Bc

RPS28A isoform 1