J3_8T3A_026
3D structure
- PDB id
- 8T3A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, sordarin, and hibernating factor Los2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- UCAAAG*CGCAAAU*AG(PSU)GACAA
- Length
- 21 nucleotides
- Bulged bases
- 8T3A|1|B5|A|468
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8T3A|1|B5|U|37
8T3A|1|B5|C|38
8T3A|1|B5|A|39
8T3A|1|B5|A|40
8T3A|1|B5|A|41
8T3A|1|B5|G|42
*
8T3A|1|B5|C|433
8T3A|1|B5|G|434
8T3A|1|B5|C|435
8T3A|1|B5|A|436
8T3A|1|B5|A|437
8T3A|1|B5|A|438
8T3A|1|B5|U|439
*
8T3A|1|B5|A|464
8T3A|1|B5|G|465
8T3A|1|B5|PSU|466
8T3A|1|B5|G|467
8T3A|1|B5|A|468
8T3A|1|B5|C|469
8T3A|1|B5|A|470
8T3A|1|B5|A|471
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BE
- 40S ribosomal protein S4-A
- Chain BJ
- 40S ribosomal protein S9-A
- Chain BX
- 40S ribosomal protein S23-A
- Chain BY
- 40S ribosomal protein S24-A
- Chain DC
- Elongation factor 2
Coloring options: