J3_8T3A_028
3D structure
- PDB id
- 8T3A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, sordarin, and hibernating factor Los2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- (PSU)UAGAUAAAAAAUCAAUG*CUCUUUG*CAUAA
- Length
- 30 nucleotides
- Bulged bases
- 8T3A|1|B5|U|216, 8T3A|1|B5|A|217, 8T3A|1|B5|U|223, 8T3A|1|B5|U|238, 8T3A|1|B5|U|240
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8T3A|1|B5|PSU|211
8T3A|1|B5|U|212
8T3A|1|B5|A|213
8T3A|1|B5|G|214
8T3A|1|B5|A|215
8T3A|1|B5|U|216
8T3A|1|B5|A|217
8T3A|1|B5|A|218
8T3A|1|B5|A|219
8T3A|1|B5|A|220
8T3A|1|B5|A|221
8T3A|1|B5|A|222
8T3A|1|B5|U|223
8T3A|1|B5|C|224
8T3A|1|B5|A|225
8T3A|1|B5|A|226
8T3A|1|B5|U|227
8T3A|1|B5|G|228
*
8T3A|1|B5|C|237
8T3A|1|B5|U|238
8T3A|1|B5|C|239
8T3A|1|B5|U|240
8T3A|1|B5|U|241
8T3A|1|B5|U|242
8T3A|1|B5|G|243
*
8T3A|1|B5|C|250
8T3A|1|B5|A|251
8T3A|1|B5|U|252
8T3A|1|B5|A|253
8T3A|1|B5|A|254
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BE
- 40S ribosomal protein S4-A
- Chain BG
- 40S ribosomal protein S6-A
- Chain BI
- 40S ribosomal protein S8-A
- Chain BL
- 40S ribosomal protein S11-A
Coloring options: