J3_8T3B_025
3D structure
- PDB id
- 8T3B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- CCAUAUC*GAG*UG
- Length
- 12 nucleotides
- Bulged bases
- 8T3B|1|A3|U|12
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8T3B|1|A3|C|9
8T3B|1|A3|C|10
8T3B|1|A3|A|11
8T3B|1|A3|U|12
8T3B|1|A3|A|13
8T3B|1|A3|U|14
8T3B|1|A3|C|15
*
8T3B|1|A3|G|65
8T3B|1|A3|A|66
8T3B|1|A3|G|67
*
8T3B|1|A3|U|111
8T3B|1|A3|G|112
Current chains
- Chain A3
- 5s rRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain AD
- RPL5 isoform 1
- Chain AI
- 60S ribosomal protein L10
- Chain AJ
- RPL11A isoform 1
- Chain AT
- 60S ribosomal protein L21-A
Coloring options: