J3_8T3B_042

3D structure

PDB id

8T3B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CAG*CAGC*GUGG

Length

11 nucleotides

Bulged bases

8T3B|1|EC|A|6896

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T3B|1|EC|C|6895
8T3B|1|EC|A|6896
8T3B|1|EC|G|6897
*
8T3B|1|EC|C|6917
8T3B|1|EC|A|6918
8T3B|1|EC|G|6919
8T3B|1|EC|C|6920
*
8T3B|1|EC|G|6933
8T3B|1|EC|U|6934
8T3B|1|EC|G|6935
8T3B|1|EC|G|6936

Current chains

Chain EC

TSV IRES

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain AJ

RPL11A isoform 1

Chain BP

RPS15 isoform 1

Chain DC

Elongation factor 2