J3_8T3C_028

3D structure

PDB id

8T3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

8T3C|1|B5|A|217, 8T3C|1|B5|A|218, 8T3C|1|B5|A|219, 8T3C|1|B5|A|220, 8T3C|1|B5|U|223, 8T3C|1|B5|C|224, 8T3C|1|B5|A|225, 8T3C|1|B5|U|238, 8T3C|1|B5|U|240

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T3C|1|B5|A|213
8T3C|1|B5|G|214
8T3C|1|B5|A|215
8T3C|1|B5|U|216
8T3C|1|B5|A|217
8T3C|1|B5|A|218
8T3C|1|B5|A|219
8T3C|1|B5|A|220
8T3C|1|B5|A|221
8T3C|1|B5|A|222
8T3C|1|B5|U|223
8T3C|1|B5|C|224
8T3C|1|B5|A|225
8T3C|1|B5|A|226
8T3C|1|B5|U|227
8T3C|1|B5|G|228
*
8T3C|1|B5|C|237
8T3C|1|B5|U|238
8T3C|1|B5|C|239
8T3C|1|B5|U|240
8T3C|1|B5|U|241
8T3C|1|B5|U|242
8T3C|1|B5|G|243
*
8T3C|1|B5|C|250
8T3C|1|B5|A|251
8T3C|1|B5|U|252

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

40S ribosomal protein S4-A

Chain BG

40S ribosomal protein S6-A

Chain BL

40S ribosomal protein S11-A