J3_8T3C_042

3D structure

PDB id

8T3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CACUG*CGUGCUGG*CGAG

Length

17 nucleotides

Bulged bases

8T3C|1|B5|U|1473, 8T3C|1|B5|G|1539

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T3C|1|B5|C|1470
8T3C|1|B5|A|1471
8T3C|1|B5|C|1472
8T3C|1|B5|U|1473
8T3C|1|B5|G|1474
*
8T3C|1|B5|C|1533
8T3C|1|B5|G|1534
8T3C|1|B5|U|1535
8T3C|1|B5|G|1536
8T3C|1|B5|C|1537
8T3C|1|B5|U|1538
8T3C|1|B5|G|1539
8T3C|1|B5|G|1540
*
8T3C|1|B5|C|1571
8T3C|1|B5|G|1572
8T3C|1|B5|A|1573
8T3C|1|B5|G|1574

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BF

Rps5p

Chain BS

40S ribosomal protein S18-A

Chain BT

40S ribosomal protein S19-A

Chain BZ

RPS25A isoform 1