J3_8T3D_001
3D structure
- PDB id
- 8T3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- CAAAUUUGAAA*UAAUUUGGAG*CGAAG
- Length
- 26 nucleotides
- Bulged bases
- 8T3D|1|A1|U|117, 8T3D|1|A1|G|120, 8T3D|1|A1|A|121, 8T3D|1|A1|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8T3D_001 not in the Motif Atlas
- Homologous match to J3_8C3A_001
- Geometric discrepancy: 0.1037
- The information below is about J3_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88489.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-tWH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
8T3D|1|A1|C|113
8T3D|1|A1|A|114
8T3D|1|A1|A|115
8T3D|1|A1|A|116
8T3D|1|A1|U|117
8T3D|1|A1|U|118
8T3D|1|A1|U|119
8T3D|1|A1|G|120
8T3D|1|A1|A|121
8T3D|1|A1|A|122
8T3D|1|A1|A|123
*
8T3D|1|A1|U|149
8T3D|1|A1|A|150
8T3D|1|A1|A|151
8T3D|1|A1|U|152
8T3D|1|A1|U|153
8T3D|1|A1|U|154
8T3D|1|A1|G|155
8T3D|1|A1|G|156
8T3D|1|A1|A|157
8T3D|1|A1|G|158
*
8T3D|1|A1|C|263
8T3D|1|A1|G|264
8T3D|1|A1|A|265
8T3D|1|A1|A|266
8T3D|1|A1|G|267
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AG
- 60S ribosomal protein L8-A
- Chain AL
- 60S ribosomal protein L13-A
- Chain AN
- 60S ribosomal protein L15-A
- Chain Ah
- 60S ribosomal protein L35-A
- Chain Ai
- 60S ribosomal protein L36-A
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