3D structure

PDB id
8T3D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III
Experimental method
ELECTRON MICROSCOPY
Resolution
2.95 Å

Loop

Sequence
UC*GAGGACUGCG*CAAGGA
Length
18 nucleotides
Bulged bases
8T3D|1|A1|A|607
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8T3D_007 not in the Motif Atlas
Homologous match to J3_8P9A_048
Geometric discrepancy: 0.1294
The information below is about J3_8P9A_048
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83726.1
Basepair signature
cWW-cWW-F-F-F-cWS-F-cWW-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

8T3D|1|A1|U|502
8T3D|1|A1|C|503
*
8T3D|1|A1|G|588
8T3D|1|A1|A|589
8T3D|1|A1|G|590
8T3D|1|A1|G|591
8T3D|1|A1|A|592
8T3D|1|A1|C|593
8T3D|1|A1|U|594
8T3D|1|A1|G|595
8T3D|1|A1|C|596
8T3D|1|A1|G|597
*
8T3D|1|A1|C|606
8T3D|1|A1|A|607
8T3D|1|A1|A|608
8T3D|1|A1|G|609
8T3D|1|A1|G|610
8T3D|1|A1|A|611

Current chains

Chain A1
25S rRNA

Nearby chains

Chain AC
RPL4A isoform 1
Chain AE
60S ribosomal protein L6-A
Chain AF
60S ribosomal protein L7-A
Chain Ae
RPL32 isoform 1

Coloring options:


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