J3_8T3D_007
3D structure
- PDB id
- 8T3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- UC*GAGGACUGCG*CAAGGA
- Length
- 18 nucleotides
- Bulged bases
- 8T3D|1|A1|A|607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8T3D_007 not in the Motif Atlas
- Homologous match to J3_8P9A_048
- Geometric discrepancy: 0.1294
- The information below is about J3_8P9A_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83726.1
- Basepair signature
- cWW-cWW-F-F-F-cWS-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8T3D|1|A1|U|502
8T3D|1|A1|C|503
*
8T3D|1|A1|G|588
8T3D|1|A1|A|589
8T3D|1|A1|G|590
8T3D|1|A1|G|591
8T3D|1|A1|A|592
8T3D|1|A1|C|593
8T3D|1|A1|U|594
8T3D|1|A1|G|595
8T3D|1|A1|C|596
8T3D|1|A1|G|597
*
8T3D|1|A1|C|606
8T3D|1|A1|A|607
8T3D|1|A1|A|608
8T3D|1|A1|G|609
8T3D|1|A1|G|610
8T3D|1|A1|A|611
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AC
- RPL4A isoform 1
- Chain AE
- 60S ribosomal protein L6-A
- Chain AF
- 60S ribosomal protein L7-A
- Chain Ae
- RPL32 isoform 1
Coloring options: