J3_8T3D_036
3D structure
- PDB id
- 8T3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- CCAG*CUAGUAA*UGAUUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8T3D_036 not in the Motif Atlas
- Homologous match to J3_8C3A_038
- Geometric discrepancy: 0.1477
- The information below is about J3_8C3A_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.2
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8T3D|1|B5|C|1161
8T3D|1|B5|C|1162
8T3D|1|B5|A|1163
8T3D|1|B5|G|1164
*
8T3D|1|B5|C|1581
8T3D|1|B5|U|1582
8T3D|1|B5|A|1583
8T3D|1|B5|G|1584
8T3D|1|B5|U|1585
8T3D|1|B5|A|1586
8T3D|1|B5|A|1587
*
8T3D|1|B5|U|1609
8T3D|1|B5|G|1610
8T3D|1|B5|A|1611
8T3D|1|B5|U|1612
8T3D|1|B5|U|1613
8T3D|1|B5|A|1614
8T3D|1|B5|C|1615
8T3D|1|B5|G|1616
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BF
- Rps5p
- Chain BQ
- 40S ribosomal protein S16-A
- Chain Bc
- RPS28A isoform 1
Coloring options: