J3_8T3D_041

3D structure

PDB id

8T3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8T3D_041 not in the Motif Atlas

Homologous match to J3_8C3A_085

Geometric discrepancy: 0.1113

The information below is about J3_8C3A_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.2

Basepair signature

cWW-F-F-F-F-tSS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8T3D|1|B5|U|1293
8T3D|1|B5|G|1294
*
8T3D|1|B5|U|1303
8T3D|1|B5|G|1304
8T3D|1|B5|U|1305
8T3D|1|B5|C|1306
*
8T3D|1|B5|G|1318
8T3D|1|B5|A|1319
8T3D|1|B5|U|1320
8T3D|1|B5|A|1321
8T3D|1|B5|A|1322

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BA

40S ribosomal protein S0-A

Chain BC

RPS2 isoform 1

Chain BR

40S ribosomal protein S17-A