J3_8T3E_009

3D structure

PDB id

8T3E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

UAG*CGUAG*UCGA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8T3E_009 not in the Motif Atlas

Homologous match to J3_8C3A_004

Geometric discrepancy: 0.116

The information below is about J3_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.5

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

8T3E|1|A1|U|829
8T3E|1|A1|A|830
8T3E|1|A1|G|831
*
8T3E|1|A1|C|863
8T3E|1|A1|G|864
8T3E|1|A1|U|865
8T3E|1|A1|A|866
8T3E|1|A1|G|867
*
8T3E|1|A1|U|892
8T3E|1|A1|C|893
8T3E|1|A1|G|894
8T3E|1|A1|A|895

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AA

60S ribosomal protein L2-A

Chain AR

60S ribosomal protein L19-A

Chain Ag

60S ribosomal protein L34-A

Chain Ap

60S ribosomal protein L43-A