J3_8T3E_015

3D structure

PDB id

8T3E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

AGAUGG*CGUUUCAAAGG*CCACCAU

Length

24 nucleotides

Bulged bases

8T3E|1|A1|C|1556, 8T3E|1|A1|A|1558, 8T3E|1|A1|A|1580

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8T3E_015 not in the Motif Atlas

Homologous match to J3_8C3A_053

Geometric discrepancy: 0.5949

The information below is about J3_8C3A_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34234.1

Basepair signature

cWW-tSH-cSH-tWH-F-F-tHS-F-cWW-F-cWW-F-F-F-F

Number of instances in this motif group

1

Unit IDs

8T3E|1|A1|A|1537
8T3E|1|A1|G|1538
8T3E|1|A1|A|1539
8T3E|1|A1|U|1540
8T3E|1|A1|G|1541
8T3E|1|A1|G|1542
*
8T3E|1|A1|C|1551
8T3E|1|A1|G|1552
8T3E|1|A1|U|1553
8T3E|1|A1|U|1554
8T3E|1|A1|U|1555
8T3E|1|A1|C|1556
8T3E|1|A1|A|1557
8T3E|1|A1|A|1558
8T3E|1|A1|A|1559
8T3E|1|A1|G|1560
8T3E|1|A1|G|1561
*
8T3E|1|A1|C|1578
8T3E|1|A1|C|1579
8T3E|1|A1|A|1580
8T3E|1|A1|C|1581
8T3E|1|A1|C|1582
8T3E|1|A1|A|1583
8T3E|1|A1|U|1584

Current chains

Chain A1

25S rRNA

Nearby chains

Chain A4

5.8S ribosomal RNA; 5.8S rRNA

Chain AA

60S ribosomal protein L2-A

Chain AG

60S ribosomal protein L8-A

Chain AN

60S ribosomal protein L15-A

Chain AX

60S ribosomal protein L25

Chain Aj

60S ribosomal protein L37-A