J3_8T3E_017

3D structure

PDB id

8T3E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

AGACG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8T3E_017 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.1128

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12393.2

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

8T3E|1|A1|A|1654
8T3E|1|A1|G|1655
8T3E|1|A1|A|1656
8T3E|1|A1|C|1657
8T3E|1|A1|G|1658
*
8T3E|1|A1|C|1791
8T3E|1|A1|C|1792
*
8T3E|1|A1|G|1796
8T3E|1|A1|A|1797
8T3E|1|A1|A|1798
8T3E|1|A1|A|1799
8T3E|1|A1|A|1800
8T3E|1|A1|U|1801

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AA

60S ribosomal protein L2-A

Chain Ag

60S ribosomal protein L34-A

Chain Ap

60S ribosomal protein L43-A