3D structure

PDB id
8T3E (explore in PDB, NAKB, or RNA 3D Hub)
Description
Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
CCAG*CUAGUAA*UGAUUACG
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8T3E_035 not in the Motif Atlas
Homologous match to J3_8C3A_038
Geometric discrepancy: 0.1458
The information below is about J3_8C3A_038
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_25303.2
Basepair signature
cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
Number of instances in this motif group
5

Unit IDs

8T3E|1|B5|C|1161
8T3E|1|B5|C|1162
8T3E|1|B5|A|1163
8T3E|1|B5|G|1164
*
8T3E|1|B5|C|1581
8T3E|1|B5|U|1582
8T3E|1|B5|A|1583
8T3E|1|B5|G|1584
8T3E|1|B5|U|1585
8T3E|1|B5|A|1586
8T3E|1|B5|A|1587
*
8T3E|1|B5|U|1609
8T3E|1|B5|G|1610
8T3E|1|B5|A|1611
8T3E|1|B5|U|1612
8T3E|1|B5|U|1613
8T3E|1|B5|A|1614
8T3E|1|B5|C|1615
8T3E|1|B5|G|1616

Current chains

Chain B5
18S rRNA

Nearby chains

Chain BF
Rps5p
Chain BQ
40S ribosomal protein S16-A
Chain Bc
RPS28A isoform 1

Coloring options:


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