J3_8T3F_012

3D structure

PDB id

8T3F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure V

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

8T3F|1|A1|A|1482, 8T3F|1|A1|U|1484

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8T3F_012 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.1287

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

8T3F|1|A1|U|1479
8T3F|1|A1|G|1480
8T3F|1|A1|A|1481
8T3F|1|A1|A|1482
8T3F|1|A1|G|1483
8T3F|1|A1|U|1484
8T3F|1|A1|G|1485
*
8T3F|1|A1|C|1857
8T3F|1|A1|A|1858
8T3F|1|A1|A|1859
*
8T3F|1|A1|U|1871
8T3F|1|A1|C|1872
8T3F|1|A1|U|1873
8T3F|1|A1|A|1874

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AR

60S ribosomal protein L19-A

Chain Ag

60S ribosomal protein L34-A