J3_8T3F_020
3D structure
- PDB id
- 8T3F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure V
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.09 Å
Loop
- Sequence
- GUC*GCCUAUCGAUCC*GGUGCC
- Length
- 21 nucleotides
- Bulged bases
- 8T3F|1|A1|C|2797
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8T3F_020 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.081
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8T3F|1|A1|G|2651
8T3F|1|A1|U|2652
8T3F|1|A1|C|2653
*
8T3F|1|A1|G|2754
8T3F|1|A1|C|2755
8T3F|1|A1|C|2756
8T3F|1|A1|U|2757
8T3F|1|A1|A|2758
8T3F|1|A1|U|2759
8T3F|1|A1|C|2760
8T3F|1|A1|G|2761
8T3F|1|A1|A|2762
8T3F|1|A1|U|2763
8T3F|1|A1|C|2764
8T3F|1|A1|C|2765
*
8T3F|1|A1|G|2793
8T3F|1|A1|G|2794
8T3F|1|A1|U|2795
8T3F|1|A1|G|2796
8T3F|1|A1|C|2797
8T3F|1|A1|C|2798
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AQ
- 60S ribosomal protein L18-A
- Chain AT
- 60S ribosomal protein L21-A
- Chain Aa
- 60S ribosomal protein L28
- Chain Ao
- 60S ribosomal protein L42-A
Coloring options: