J3_8T3F_035

3D structure

PDB id

8T3F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure V

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8T3F_035 not in the Motif Atlas

Homologous match to J3_8C3A_038

Geometric discrepancy: 0.1436

The information below is about J3_8C3A_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.2

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8T3F|1|B5|C|1161
8T3F|1|B5|C|1162
8T3F|1|B5|A|1163
8T3F|1|B5|G|1164
*
8T3F|1|B5|C|1581
8T3F|1|B5|U|1582
8T3F|1|B5|A|1583
8T3F|1|B5|G|1584
8T3F|1|B5|U|1585
8T3F|1|B5|A|1586
8T3F|1|B5|A|1587
*
8T3F|1|B5|U|1609
8T3F|1|B5|G|1610
8T3F|1|B5|A|1611
8T3F|1|B5|U|1612
8T3F|1|B5|U|1613
8T3F|1|B5|A|1614
8T3F|1|B5|C|1615
8T3F|1|B5|G|1616

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BF

Rps5p

Chain BQ

40S ribosomal protein S16-A

Chain Bc

RPS28A isoform 1