J3_8T4S_010

3D structure

PDB id

8T4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 protein bound to the Human 40S Ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

8T4S|1|2|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8T4S_010 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.052

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8T4S|1|2|A|40
8T4S|1|2|G|41
8T4S|1|2|A|42
8T4S|1|2|U|43
8T4S|1|2|U|44
8T4S|1|2|A|45
8T4S|1|2|A|46
8T4S|1|2|G|47
*
8T4S|1|2|C|479
8T4S|1|2|G|480
8T4S|1|2|C|481
8T4S|1|2|G|482
8T4S|1|2|C|483
8T4S|1|2|A|484
8T4S|1|2|A|485
8T4S|1|2|A|486
8T4S|1|2|U|487
*
8T4S|1|2|A|512
8T4S|1|2|G|513
8T4S|1|2|U|514

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain X

40S ribosomal protein S23