J3_8T5D_007

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8T5D_007 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0831

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn in J3

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

8T5D|1|B|C|2091
8T5D|1|B|U|2092
8T5D|1|B|G|2093
*
8T5D|1|B|C|2196
8T5D|1|B|U|2197
8T5D|1|B|A|2198
8T5D|1|B|A|2199
8T5D|1|B|C|2200
*
8T5D|1|B|G|2223
8T5D|1|B|G|2224
8T5D|1|B|A|2225
8T5D|1|B|C|2226
8T5D|1|B|A|2227
8T5D|1|B|G|2228

Current chains

Chain B

23S RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain X

50S ribosomal protein L28