J3_8T5D_010
3D structure
- PDB id
- 8T5D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAAC*GUUGAU*AAUGAAC
- Length
- 17 nucleotides
- Bulged bases
- 8T5D|1|B|U|2833, 8T5D|1|B|A|2835, 8T5D|1|B|U|2884
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8T5D_010 not in the Motif Atlas
- Homologous match to J3_5J7L_048
- Geometric discrepancy: 0.1427
- The information below is about J3_5J7L_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64069.1
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
8T5D|1|B|G|2812
8T5D|1|B|A|2813
8T5D|1|B|A|2814
8T5D|1|B|C|2815
*
8T5D|1|B|G|2831
8T5D|1|B|U|2832
8T5D|1|B|U|2833
8T5D|1|B|G|2834
8T5D|1|B|A|2835
8T5D|1|B|U|2836
*
8T5D|1|B|A|2882
8T5D|1|B|A|2883
8T5D|1|B|U|2884
8T5D|1|B|G|2885
8T5D|1|B|A|2886
8T5D|1|B|A|2887
8T5D|1|B|C|2888
Current chains
- Chain B
- 23S RNA
Nearby chains
- Chain 0
- 50S ribosomal protein L32
- Chain D
- 50S ribosomal protein L3
- Chain N
- 50S ribosomal protein L17
- Chain S
- 50S ribosomal protein L22
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