J3_8T5H_009

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

8T5H|1|B|A|2518, 8T5H|1|B|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8T5H_009 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.0922

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

8T5H|1|B|C|2517
8T5H|1|B|A|2518
8T5H|1|B|U|2519
8T5H|1|B|C|2520
*
8T5H|1|B|G|2545
8T5H|1|B|U|2546
8T5H|1|B|A|2547
*
8T5H|1|B|U|2561
8T5H|1|B|U|2562
8T5H|1|B|U|2563
8T5H|1|B|A|2564
8T5H|1|B|A|2565
8T5H|1|B|A|2566
8T5H|1|B|G|2567

Current chains

Chain B

23S

Nearby chains

Chain K

50S ribosomal protein L14