J3_8T5H_023

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAU*AUUUAAAGAAA*UCAC

Length

19 nucleotides

Bulged bases

8T5H|1|B|U|1083, 8T5H|1|B|A|1084, 8T5H|1|B|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T5H|1|B|G|1055
8T5H|1|B|G|1056
8T5H|1|B|A|1057
8T5H|1|B|U|1058
*
8T5H|1|B|A|1080
8T5H|1|B|U|1081
8T5H|1|B|U|1082
8T5H|1|B|U|1083
8T5H|1|B|A|1084
8T5H|1|B|A|1085
8T5H|1|B|A|1086
8T5H|1|B|G|1087
8T5H|1|B|A|1088
8T5H|1|B|A|1089
8T5H|1|B|A|1090
*
8T5H|1|B|U|1101
8T5H|1|B|C|1102
8T5H|1|B|A|1103
8T5H|1|B|C|1104

Current chains

Chain B

23S

Nearby chains

Chain 4

50S ribosomal protein L36