3D structure

PDB id
8T5H (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CUUGACAU*ACAG*CUUACG
Length
18 nucleotides
Bulged bases
8T5H|1|v|U|1212, 8T5H|1|v|C|1214
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8T5H_035 not in the Motif Atlas
Homologous match to J3_5J7L_053
Geometric discrepancy: 0.1577
The information below is about J3_5J7L_053
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_76475.2
Basepair signature
cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW
Number of instances in this motif group
2

Unit IDs

8T5H|1|v|C|990
8T5H|1|v|U|991
8T5H|1|v|U|992
8T5H|1|v|G|993
8T5H|1|v|A|994
8T5H|1|v|C|995
8T5H|1|v|A|996
8T5H|1|v|U|997
*
8T5H|1|v|A|1044
8T5H|1|v|C|1045
8T5H|1|v|A|1046
8T5H|1|v|G|1047
*
8T5H|1|v|C|1210
8T5H|1|v|U|1211
8T5H|1|v|U|1212
8T5H|1|v|A|1213
8T5H|1|v|C|1214
8T5H|1|v|G|1215

Current chains

Chain v
16S

Nearby chains

Chain m
30S ribosomal protein S14

Coloring options:


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