J3_8T5H_036

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

8T5H|1|v|U|1086

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8T5H_036 not in the Motif Atlas

Homologous match to J3_6CZR_024

Geometric discrepancy: 0.2128

The information below is about J3_6CZR_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04260.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8T5H|1|v|U|1073
8T5H|1|v|G|1074
*
8T5H|1|v|U|1083
8T5H|1|v|G|1084
8T5H|1|v|U|1085
8T5H|1|v|U|1086
8T5H|1|v|G|1087
*
8T5H|1|v|C|1098
8T5H|1|v|G|1099
8T5H|1|v|C|1100
8T5H|1|v|A|1101
8T5H|1|v|A|1102

Current chains

Chain v

16S

Nearby chains

Chain d

30S ribosomal protein S5