J3_8T8B_040

3D structure

PDB id

8T8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MAI-tripeptidyl-tRNA analog ACCA-IAMf at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

CUCG*CGAUAGCGCACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

8T8B|1|1A|U|448, 8T8B|1|1A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8T8B_040 not in the Motif Atlas

Homologous match to J3_9DFE_003

Geometric discrepancy: 0.037

The information below is about J3_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.1

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

10

Unit IDs

8T8B|1|1A|C|32
8T8B|1|1A|U|33
8T8B|1|1A|C|34
8T8B|1|1A|G|35
*
8T8B|1|1A|C|445
8T8B|1|1A|G|446
8T8B|1|1A|A|447
8T8B|1|1A|U|448
8T8B|1|1A|A|449
8T8B|1|1A|G|450
8T8B|1|1A|C|451
8T8B|1|1A|G|452
8T8B|1|1A|C|453
8T8B|1|1A|A|454
8T8B|1|1A|C|455
8T8B|1|1A|C|456
8T8B|1|1A|A|457
8T8B|1|1A|G|458
8T8B|1|1A|U|459
8T8B|1|1A|A|460
8T8B|1|1A|C|461
*
8T8B|1|1A|G|468
8T8B|1|1A|G|469
8T8B|1|1A|A|470
8T8B|1|1A|A|471
8T8B|1|1A|A|472
8T8B|1|1A|G|473

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1F

50S ribosomal protein L4

Chain 1U

50S ribosomal protein L20

Chain 1X

50S ribosomal protein L23